PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity

Chris Wymant, Matthew Hall, Oliver Ratmann, David Bonsall, Tanya Golubchik, Mariateresa de Cesare, Astrid Gall, Marion Cornelissen, Christophe Fraser, The Maela Pneumococcal Collaboration, The BEEHIVE Collaboration STOP-HCV Consortium
March 2018
Cite DOI
Type
Journal article
Publication
Mol. Biol. Evol.
Oliver Ratmann
Oliver Ratmann
Reader in Statistics and Machine Learning for Public Good

I develop bespoke statistical methods for public good. My group and I are particularly interested in novel Bayesian methods that harness information in viral deep sequence data, mobile phone mobility data, and time-resolved patient data to characterise the spread of infectious diseases, and to guide public health interventions.